porthoDom

porthoDom is a program for orthology detection using protein domains as a filtering step. It is meant to be used with proteinOrtho.

The porthoDom software with detailed installation instruction can be downloaded at this link: porthodom.tar.bz2

The git repository with the latest code development can be found here: https://ebbgit.uni-muenster.de/tbitardfeildel/porthoda

The Pfam 27 domain pairwise similarity matrix can be found here: matrixPfam27_bin_1.dat.gz

Citation

If you used porthoDom in your project please cite our publication:

Bitard-Feildel T, Kemena C, Greenwood JM, Bornberg-Bauer E, Domain similarity based orthology detection, BMC Bioinformatics. BMC Bioinformatics. 2015 16:154. doi: 10.1186/s12859-015-0570-8.

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0570-8