build_index() const (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
index_changed() const (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
n_seqs() const (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
next() (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
operator[](unsigned int index) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
operator[](std::string &seq_id) (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
operator[](unsigned int index) const | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
operator[](const std::string &seq_id) const (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
read(const std::string &seq_f) (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
read_index(const std::string &index_f) (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
seq(unsigned int index) const (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
SequenceSetBase() (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
SequenceSetBase(const std::string &seq_f) (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
SequenceSetBase(const std::string &seq_f, const std::string &index_f) (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
set_file(const std::string &seq_f) (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
set_file(const std::string &seq_f, const std::string &index_f) (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
write_index(const std::string &index_f) const (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inline |
~SequenceSetBase() (defined in MDAT::SequenceSetBase< SequenceType, MemSafe >) | MDAT::SequenceSetBase< SequenceType, MemSafe > | inlinevirtual |