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MDAT::HMM Member List

This is the complete list of members for MDAT::HMM, including all inherited members.

calculate_insertion_probs(const DataType &aln, std::vector< float > &ins_probs)MDAT::HMM
calculate_insertion_probs_splitted(const DataType &aln_vec, std::vector< float > &ins_probs)MDAT::HMM
calculate_match_probs(const DataType &aln1, const DataType &aln2, Matrix< float > &match_probs)MDAT::HMM
calculate_match_probs_splitted(const DataType &aln_vec1, const DataType &aln_vec2, Matrix< float > &match_probs, size_t start, size_t end)MDAT::HMM
HMM(char type)MDAT::HMM
init_distribution() const MDAT::HMMinline
ins_probs() const MDAT::HMMinline
match_probs() const MDAT::HMMinline
num_ins_states() const MDAT::HMMinline
num_states() const MDAT::HMMinline
trans_probs() const MDAT::HMMinline
~HMM() (defined in MDAT::HMM)MDAT::HMMvirtual