MDA
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Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
[detail level 12]
oNMDATThe general namespace of this project
|oCOpt_DAStructure to contain the MDA options
|oChmm_match
|oCHMM
|oCMatch_pointSimple struct to save a match and its score
|oCLibraryA Library object stores pairwise matches and is able to do the consistency extension
|oCSequenceGapFunc
|oCSequenceSetGapFunc
|oCDomainClass to represent a domain
|oCDomainArchitectureRepresents a set of domains
|oCDomainArchitectureSetClass to store several Architectures
|oCSingleSequenceFeature
|oCSequenceFeatures
|oCTag
|oCStrTokA string tokenizer class which in difference to standard C is thread save
|oCTreeNode
|oCTreeThis class provides several methods to read, compute and manipulate trees
|oCVector
|oCDNASequenceA special class for DNA sequences
|oCProteinSequenceA class to represent a protein sequence
|oCProteinSequenceSetA SequenceSet object for sequences of type ProteinSequence
|oCSequenceA generic class to represent a plain sequence
|oCSequence_Interface
|oCSequenceSetBaseThe base class for a SequenceSet
|oCInput_Sort
|oCSeq_Sort
|oCName_Sort
|oCSequenceSetBase< SequenceType, MemSafe >This SequenceSet class uses less memory than the normal one
|oCSplitSet
|oCCRS_MatA class to store the Pfam domain matches in a compact way
|oCMatrixA simple class to produce 2 dimensional matrices
|oCMatrix1LineA simple class to produce 2 dimensional matrices
|\CMatrixStackA simple class to contain a set of 2 dimensional matrices
oCAlign_Test
oCAlignment_ExceptionException thrown when trying to read a file (e.g. format problems)
oCGene
oCHMM_Test
oCLibrary_Test
oCMatrix_Test
oCMDAT_IO_ExceptionException thrown for failed opening of a file
oCMRNA
oCOpt_dom
oCOpt_general
oCOpt_graphic
oCOpt_msa
oCSequence_Test
oCSequenceSet_Test
oCSingleSequenceFeature
\CThreadPool