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DNASequence.hpp
1 /*
2  * DNASequence.hpp
3  *
4  * Created on: Jun 10, 2013
5  * Author: Carsten Kemena
6  *
7  * This file is part of MDAT.
8  *
9  * MDAT is free software: you can redistribute it and/or modify
10  * it under the terms of the GNU Lesser General Public License as published by
11  * the Free Software Foundation, either version 3 of the License, or
12  * (at your option) any later version.
13  *
14  * MDAT is distributed in the hope that it will be useful,
15  * but WITHOUT ANY WARRANTY; without even the implied warranty of
16  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
17  * GNU Lesser General Public License for more details.
18  *
19  * You should have received a copy of the GNU Lesser General Public License
20  * along with MDAT. If not, see <http://www.gnu.org/licenses/>.
21  *
22  */
23 
24 #ifndef DNASEQUENCE_HPP_
25 #define DNASEQUENCE_HPP_
26 
27 #include "Sequence.hpp"
28 #include "../Annotation/SequenceFeatures.hpp"
29 
30 namespace MDAT
31 {
32 
41 {
42 private:
43  SequenceFeatures<int> *_genome_features;
44 
45 public:
46  DNASequence(const std::string &seq_name, const std::string &comment_, const std::string &seq, size_t seq_id=0);
47  DNASequence(const std::string &seq_name, const std::string &comment_, unsigned int seq_length=0, size_t seq_id=0);
48  DNASequence(const Sequence &seq);
49  virtual ~DNASequence();
50 
51 };
52 
58 } /* namespace Sequence */
59 #endif /* DNASEQUENCE_HPP_ */