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Class Hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
[detail level
1
2
]
binary_function
MDAT::Input_Sort< T >
MDAT::Name_Sort< T >
MDAT::Seq_Sort< T >
MDAT::CRS_Mat< DataType >
A class to store the Pfam domain matches in a compact way
MDAT::Domain
Class to represent a domain
MDAT::DomainArchitecture
Represents a set of domains
MDAT::DomainArchitectureSet
Class to store several Architectures
Gene
MDAT::HMM
MDAT::hmm_match
MDAT::Library< DataType >
A
Library
object stores pairwise matches and is able to do the consistency extension
MDAT::Match_point
Simple struct to save a match and its score
MDAT::Matrix< DataType >
A simple class to produce 2 dimensional matrices
MDAT::Matrix1Line< DataType >
A simple class to produce 2 dimensional matrices
MDAT::Matrix< float >
MDAT::Matrix< int >
MDAT::Matrix< short >
MDAT::MatrixStack< n, DataType >
A simple class to contain a set of 2 dimensional matrices
MRNA
MDAT::Opt_DA
Structure to contain the MDA options
Opt_dom
Opt_general
Opt_graphic
Opt_msa
runtime_error
Alignment_Exception
Exception thrown when trying to read a file (e.g. format problems)
MDAT_IO_Exception
Exception thrown for failed opening of a file
MDAT::Sequence
A generic class to represent a plain sequence
MDAT::DNASequence
A special class for DNA sequences
MDAT::ProteinSequence
A class to represent a protein sequence
MDAT::Sequence_Interface
MDAT::SequenceFeatures< FeatureType >
MDAT::SequenceFeatures< int >
MDAT::SequenceGapFunc< Data >
MDAT::SequenceSetBase< SequenceType, MemoryType >
The base class for a SequenceSet
MDAT::SequenceSetBase< ProteinSequence, MemoryType >
MDAT::ProteinSequenceSet< MemoryType >
A SequenceSet object for sequences of type
ProteinSequence
MDAT::SequenceSetBase< SequenceType, MemSafe >
This SequenceSet class uses less memory than the normal one
MDAT::SequenceSetGapFunc
MDAT::SingleSequenceFeature
SingleSequenceFeature
MDAT::SplitSet< DataType >
MDAT::StrTok
A string tokenizer class which in difference to standard C is thread save
MDAT::Tag< T >
TestSuite
Align_Test
HMM_Test
Library_Test
Matrix_Test
Sequence_Test
SequenceSet_Test
ThreadPool< T >
MDAT::Tree
This class provides several methods to read, compute and manipulate trees
MDAT::TreeNode
MDAT::Vector< DataType >
Generated on Tue Nov 19 2013 18:24:39 for MDA by
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