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MDAT::DNASequence Member List

This is the complete list of members for MDAT::DNASequence, including all inherited members.

append(const T &seq)MDAT::Sequenceinline
append(const Sequence &seq)MDAT::Sequenceinline
append(char c)MDAT::Sequenceinline
comment() const MDAT::Sequenceinline
comment(const std::string &com)MDAT::Sequenceinline
dna2prot(const SequenceTypeIn &seq)MDAT::Sequencerelated
DNASequence(const std::string &seq_name, const std::string &comment_, const std::string &seq, size_t seq_id=0) (defined in MDAT::DNASequence)MDAT::DNASequence
DNASequence(const std::string &seq_name, const std::string &comment_, unsigned int seq_length=0, size_t seq_id=0) (defined in MDAT::DNASequence)MDAT::DNASequence
DNASequence(const Sequence &seq) (defined in MDAT::DNASequence)MDAT::DNASequence
id() const MDAT::Sequenceinline
id(size_t val)MDAT::Sequenceinline
insert_gaps(const std::vector< std::pair< unsigned int, unsigned int > > vec)MDAT::Sequence
insert_gaps(const std::string &edit_string) (defined in MDAT::Sequence)MDAT::Sequence
length() const MDAT::Sequenceinline
name() const MDAT::Sequenceinline
name(const std::string &na) (defined in MDAT::Sequence)MDAT::Sequenceinline
operator=(const Sequence &other) (defined in MDAT::Sequence)MDAT::Sequenceinline
operator[](unsigned int index)MDAT::Sequenceinline
operator[](unsigned int index) const MDAT::Sequenceinline
resize(unsigned int new_length)MDAT::Sequenceinline
reverse()MDAT::Sequenceinline
reverse_complement(SequenceType &seq)MDAT::Sequencerelated
Sequence(const std::string &seq_name, const std::string &seq, const std::string &comment_="", size_t seq_id=0)MDAT::Sequence
Sequence(const std::string &seq_name, const std::string &comment_, unsigned int seq_length, size_t seq_id=0)MDAT::Sequence
Sequence(const Sequence &seq)MDAT::Sequence
sequence() const MDAT::Sequenceinline
sequence(const std::string &seq)MDAT::Sequenceinline
size() const MDAT::Sequenceinline
substr(const SequenceType &seq, size_t start, size_t length)MDAT::Sequencerelated
substr_end(const SequenceType &seq, size_t start, size_t end)MDAT::Sequencerelated
substr_no_renaming(const SequenceType &seq, size_t start, size_t length)MDAT::Sequencerelated
to_lower()MDAT::Sequenceinline
to_upper()MDAT::Sequenceinline
ungapped_size() const MDAT::Sequence
~DNASequence() (defined in MDAT::DNASequence)MDAT::DNASequencevirtual
~Sequence()MDAT::Sequencevirtual