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MDAT::SequenceSetBase< SequenceType, MemoryType > Member List

This is the complete list of members for MDAT::SequenceSetBase< SequenceType, MemoryType >, including all inherited members.

add_seq(SequenceType *seq)MDAT::SequenceSetBase< SequenceType, MemoryType >inline
avg_size() const MDAT::SequenceSetBase< SequenceType, MemoryType >
clear()MDAT::SequenceSetBase< SequenceType, MemoryType >inline
delete_seqs(const std::map< std::string, bool > &names)MDAT::SequenceSetBase< SequenceType, MemoryType >virtual
delete_seqs(std::vector< size_t > &indices)MDAT::SequenceSetBase< SequenceType, MemoryType >virtual
empty() const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
file() const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
id() const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
id(int val)MDAT::SequenceSetBase< SequenceType, MemoryType >inline
insert_gaps(const std::string &edit_string)MDAT::SequenceSetBase< SequenceType, MemoryType >
keep_seqs(std::vector< size_t > &indices)MDAT::SequenceSetBase< SequenceType, MemoryType >virtual
length() const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
n_seqs() const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
operator<<(std::ostream &out, const SequenceSetBase< SeqType, MemType > &seqSet)MDAT::SequenceSetBase< SequenceType, MemoryType >friend
operator[](unsigned int index)MDAT::SequenceSetBase< SequenceType, MemoryType >inline
operator[](unsigned int index) const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
operator[](const std::string &seq_name)MDAT::SequenceSetBase< SequenceType, MemoryType >inline
operator[](const std::string &seq_name) const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
read(const std::string &seq_f, const std::vector< std::string > &seq_names, bool check=false, short format=-1)MDAT::SequenceSetBase< SequenceType, MemoryType >virtual
read(const std::string &seq_f, bool check=false, short format=-1)MDAT::SequenceSetBase< SequenceType, MemoryType >inlinevirtual
seq(unsigned int index) const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
seq_type() const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
seq_type(char seq_type_)MDAT::SequenceSetBase< SequenceType, MemoryType >inline
SequenceSetBase()MDAT::SequenceSetBase< SequenceType, MemoryType >
SequenceSetBase(size_t value) (defined in MDAT::SequenceSetBase< SequenceType, MemoryType >)MDAT::SequenceSetBase< SequenceType, MemoryType >
share(const SequenceSetBase< SequenceType, MemoryType > &set, size_t id)MDAT::SequenceSetBase< SequenceType, MemoryType >inline
size() const MDAT::SequenceSetBase< SequenceType, MemoryType >inline
sort(std::string type)MDAT::SequenceSetBase< SequenceType, MemoryType >
to_lower()MDAT::SequenceSetBase< SequenceType, MemoryType >inline
to_upper()MDAT::SequenceSetBase< SequenceType, MemoryType >inline
transfer(SequenceSetBase< SequenceType, MemoryType > &set, size_t id)MDAT::SequenceSetBase< SequenceType, MemoryType >inline
transfer(SequenceSetBase< SequenceType, MemoryType > &set)MDAT::SequenceSetBase< SequenceType, MemoryType >inline
value_type typedefMDAT::SequenceSetBase< SequenceType, MemoryType >
write(const std::string &seq_f, const std::string format) const MDAT::SequenceSetBase< SequenceType, MemoryType >virtual
~SequenceSetBase()MDAT::SequenceSetBase< SequenceType, MemoryType >virtual