MDA
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Public Member Functions | |
void | read_gff (const std::string &gff_f) |
Reads a GFF file. More... | |
void | write_gff (const std::string &out_f) |
Write data to disk. More... | |
SequenceFeatures_iter | begin () |
SequenceFeatures_iter | end () |
SequenceFeatures_iter | begin (const std::string &seq_name) |
Iterator to the first feature of a given sequence. More... | |
SequenceFeatures_iter | end (const std::string &seq_name) |
Iterator to the element behind the last element of a given sequence. More... | |
void | append (const std::string &seq_id, const SingleSequenceFeature &feature) |
void | add_introns () |
Add introns to each gene. | |
bool | empty () const |
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inline |
Iterator to the first feature of a given sequence.
seq_id | The sequence name. |
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inline |
Checks if any features have been found.
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inline |
Iterator to the element behind the last element of a given sequence.
seq_id | The sequence name. |
void MDAT::SequenceFeatures< FeatureType >::read_gff | ( | const std::string & | gff_f | ) |
Reads a GFF file.
gff_f | The file to read in gff format. |
void MDAT::SequenceFeatures< FeatureType >::write_gff | ( | const std::string & | out_f | ) |
Write data to disk.
out_f | The output file to write to. |