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MDAT::Opt_DA Struct Reference

Structure to contain the MDA options. More...

#include <domain_aln.hpp>

Public Attributes

int match
 The match score of two domains.
 
int mismatch
 The mismatch scores of two domains.
 
MDAT::Matrix< short > matches
 Is unequal 0 if two domains are similar.
 
int terminal_gop
 The terminal gap opening penalties.
 
int terminal_gep
 The terminal gap extension penalties.
 
int gop
 The gap opening penalties.
 
int gep
 The gep extension penalties.
 
int l_prop
 
int scale
 
std::string dmpm_f
 

Detailed Description

Structure to contain the MDA options.