MDA
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This is the complete list of members for MDAT::ProteinSequence, including all inherited members.
add_domain(const Domain &dom) | MDAT::ProteinSequence | inline |
append(const T &seq) | MDAT::Sequence | inline |
append(const Sequence &seq) | MDAT::Sequence | inline |
append(char c) | MDAT::Sequence | inline |
comment() const | MDAT::Sequence | inline |
comment(const std::string &com) | MDAT::Sequence | inline |
dna2prot(const SequenceTypeIn &seq) | MDAT::Sequence | related |
dom_archi() | MDAT::ProteinSequence | inline |
dom_archi() const | MDAT::ProteinSequence | inline |
domain(size_t index) | MDAT::ProteinSequence | inline |
id() const | MDAT::Sequence | inline |
id(size_t val) | MDAT::Sequence | inline |
insert_gaps(const std::vector< std::pair< unsigned int, unsigned int > > vec) | MDAT::Sequence | |
insert_gaps(const std::string &edit_string) (defined in MDAT::Sequence) | MDAT::Sequence | |
length() const | MDAT::Sequence | inline |
n_domains() const | MDAT::ProteinSequence | inline |
name() const | MDAT::Sequence | inline |
name(const std::string &na) (defined in MDAT::Sequence) | MDAT::Sequence | inline |
operator=(const Sequence &other) (defined in MDAT::Sequence) | MDAT::Sequence | inline |
operator[](unsigned int index) | MDAT::Sequence | inline |
operator[](unsigned int index) const | MDAT::Sequence | inline |
ProteinSequence(const std::string &seq_name, const std::string &seq, const std::string &comment_="", size_t seq_id=0) | MDAT::ProteinSequence | |
ProteinSequence(const std::string &seq_name, const std::string &comment_, unsigned int seq_length, size_t seq_id=0) | MDAT::ProteinSequence | |
ProteinSequence(const Sequence &seq) | MDAT::ProteinSequence | |
resize(unsigned int new_length) | MDAT::Sequence | inline |
reverse() | MDAT::Sequence | inline |
reverse_complement(SequenceType &seq) | MDAT::Sequence | related |
sequence() const | MDAT::Sequence | inline |
sequence(const std::string &seq) | MDAT::Sequence | inline |
Sequence(const std::string &seq_name, const std::string &seq, const std::string &comment_="", size_t seq_id=0) | MDAT::Sequence | |
Sequence(const std::string &seq_name, const std::string &comment_, unsigned int seq_length, size_t seq_id=0) | MDAT::Sequence | |
Sequence(const Sequence &seq) | MDAT::Sequence | |
size() const | MDAT::Sequence | inline |
substr(const SequenceType &seq, size_t start, size_t length) | MDAT::Sequence | related |
substr_end(const SequenceType &seq, size_t start, size_t end) | MDAT::Sequence | related |
substr_no_renaming(const SequenceType &seq, size_t start, size_t length) | MDAT::Sequence | related |
to_lower() | MDAT::Sequence | inline |
to_upper() | MDAT::Sequence | inline |
ungapped_size() const | MDAT::Sequence | |
~ProteinSequence() (defined in MDAT::ProteinSequence) | MDAT::ProteinSequence | virtual |
~Sequence() | MDAT::Sequence | virtual |