MDA
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This is the complete list of members for MDAT::HMM, including all inherited members.
calculate_insertion_probs(const DataType &aln, std::vector< float > &ins_probs) | MDAT::HMM | |
calculate_insertion_probs_splitted(const DataType &aln_vec, std::vector< float > &ins_probs) | MDAT::HMM | |
calculate_match_probs(const DataType &aln1, const DataType &aln2, Matrix< float > &match_probs) | MDAT::HMM | |
calculate_match_probs_splitted(const DataType &aln_vec1, const DataType &aln_vec2, Matrix< float > &match_probs, size_t start, size_t end) | MDAT::HMM | |
HMM(char type) | MDAT::HMM | |
init_distribution() const | MDAT::HMM | inline |
ins_probs() const | MDAT::HMM | inline |
match_probs() const | MDAT::HMM | inline |
num_ins_states() const | MDAT::HMM | inline |
num_states() const | MDAT::HMM | inline |
trans_probs() const | MDAT::HMM | inline |
~HMM() (defined in MDAT::HMM) | MDAT::HMM | virtual |