MDA
|
Structure to contain the MDA options. More...
#include <domain_aln.hpp>
Public Attributes | |
int | match |
The match score of two domains. | |
int | mismatch |
The mismatch scores of two domains. | |
MDAT::Matrix< short > | matches |
Is unequal 0 if two domains are similar. | |
int | terminal_gop |
The terminal gap opening penalties. | |
int | terminal_gep |
The terminal gap extension penalties. | |
int | gop |
The gap opening penalties. | |
int | gep |
The gep extension penalties. | |
int | l_prop |
int | scale |
std::string | dmpm_f |
Structure to contain the MDA options.